Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cmaq_0437KEGG: pis:Pisl_0736 PilT protein domain protein. (124 aa)    
Predicted Functional Partners:
Cmaq_1049
PFAM: protein of unknown function RIO1; RIO2 kinase, winged helix-like; KEGG: hbu:Hbut_0072 RIO-like serine/threonine kinase.
   
 0.992
Cmaq_0498
Non-specific serine/threonine protein kinase; PFAM: protein of unknown function RIO1; KEGG: tpe:Tpen_0513 protein of unknown function RIO1.
   
 0.986
rps4
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
 0.934
Cmaq_1334
PFAM: ribosomal RNA adenine methylase transferase; KEGG: pai:PAE3221 dimethyladenosine transferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
 
 0.934
rps11
Ribosomal protein S11; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
   
 0.919
rps7
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.
   
 0.915
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: pis:Pisl_0771 ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
   
  0.913
rps8
Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
    
 0.912
rps17e
KEGG: hbu:Hbut_0482 30S ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family.
   
  0.910
rps15
PFAM: ribosomal protein S15; Ribosomal S13S15-like; KEGG: pis:Pisl_0780 ribosomal S13S15-like protein.
   
  0.910
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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