STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_0474PFAM: TatD-related deoxyribonuclease; KEGG: pis:Pisl_1844 TatD-related deoxyribonuclease. (289 aa)    
Predicted Functional Partners:
Cmaq_0475
TIGRFAM: ZPR1-like zinc finger protein; ZPR1-related zinc finger protein; PFAM: Zinc finger, ZPR1-type; KEGG: pis:Pisl_1210 ZPR1-like zinc finger protein.
 
     0.799
rpl31e
PFAM: Ribosomal protein L31e; KEGG: pai:PAE3095 ribosomal protein L31; Belongs to the ribosomal protein L31e family.
  
     0.677
Cmaq_1765
NMD3; PFAM: NMD3; KEGG: pai:PAE1653 hypothetical protein.
 
     0.668
Cmaq_1149
SMART: helix-turn-helix domain protein; KEGG: pai:PAE1638 putative transcriptional regulator.
  
     0.627
Cmaq_1785
PFAM: GHMP kinase; KEGG: pis:Pisl_1364 hypothetical protein.
 
     0.604
Cmaq_0479
Electron-transferring-flavoprotein dehydrogenase; PFAM: monooxygenase FAD-binding; HI0933 family protein; FAD dependent oxidoreductase; KEGG: pis:Pisl_0648 FAD dependent oxidoreductase.
  
    0.600
Cmaq_1781
PFAM: Protein of unknown function DUF137; KEGG: pai:PAE3406 hypothetical protein.
 
     0.598
Cmaq_1687
PFAM: helix-turn-helix domain protein; KEGG: pis:Pisl_1655 transcriptional regulator, XRE family.
  
     0.591
Cmaq_0473
PFAM: Translin; KEGG: pis:Pisl_1593 translin.
       0.590
Cmaq_0476
PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: pis:Pisl_0645 electron transfer flavoprotein, alpha subunit.
       0.584
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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