Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_0648Hypothetical protein. (282 aa)    
Predicted Functional Partners:
Cmaq_0645
KEGG: tpe:Tpen_0720 hypothetical protein.
       0.773
Cmaq_0646
Hypothetical protein.
       0.773
Cmaq_0647
Hypothetical protein.
       0.773
Cmaq_0035
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: tac:Ta1041m hypothetical protein.
  
  
 0.593
Cmaq_1940
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pto:PTO1253 ferredoxin.
  
  
 0.435
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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