STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_0649PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rsp:RSP_3671 putative D-tagatose 3-epimerase. (304 aa)    
Predicted Functional Partners:
nac
Ubiquitin-associated- domain-containing protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.
       0.603
Cmaq_1662
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tpe:Tpen_1349 xylose isomerase domain protein TIM barrel.
 
     0.555
Cmaq_1496
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: oih:OB3419 hypothetical protein.
 
     0.540
Cmaq_0948
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bcl:ABC3437 hypothetical protein.
 
     0.522
Cmaq_0435
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sso:SSO3034 hypothetical protein.
  
     0.463
Cmaq_1497
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC0577 oxidoreductase.
 
  
 0.435
Cmaq_0809
Transketolase central region; PFAM: Transketolase domain protein; Transketolase central region; KEGG: sai:Saci_0181 pyridine-binding domain transketolase.
 
     0.421
Cmaq_1053
KEGG: sth:STH1938 hypothetical protein.
  
     0.407
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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