Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Cmaq_0688PFAM: protein of unknown function DUF711; KEGG: pai:PAE2151 hypothetical protein. (352 aa)    
Predicted Functional Partners:
Cmaq_0687
PFAM: aminotransferase class-III; KEGG: pis:Pisl_1743 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.676
Cmaq_0689
Hypothetical protein.
       0.639
Cmaq_0794
KEGG: ape:APE_0812 hypothetical protein.
       0.500
Cmaq_0690
KEGG: pai:PAE3080 hypothetical protein.
       0.440
Cmaq_1593
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sto:ST1380 cysteine synthase.
 
    0.410
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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