Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cmaq_0843DNA-(apurinic or apyrimidinic site) lyase; PFAM: N-glycosylase/DNA lyase, archaea; KEGG: pai:PAE2237 hypothetical protein. (285 aa)    
Predicted Functional Partners:
Cmaq_0844
KEGG: pis:Pisl_1695 hypothetical protein.
       0.794
Cmaq_0845
PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: tpe:Tpen_0864 peptidase M50.
       0.779
Cmaq_0840
PFAM: monooxygenase FAD-binding; KEGG: mac:MA3894 bacteriochlorophyll synthase.
       0.705
Cmaq_0841
TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; KEGG: pab:PAB2077 hypothetical protein.
       0.705
Cmaq_0842
Resolvase domain; PFAM: regulatory protein MerR; Resolvase domain; KEGG: pab:PAB2076 resolvase related protein.
       0.705
Cmaq_0846
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pai:PAE1038 D-3-phosphoglycerate dehydrogenase.
       0.521
fen
XPG I; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. Acts as a genom [...]
      
 0.498
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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