Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Cmaq_0886PFAM: type II secretion system protein E; KEGG: hbu:Hbut_0213 TypeII/TypeIV secretory system protein, ATPase. (455 aa)    
Predicted Functional Partners:
Cmaq_1648
PFAM: type II secretion system protein; KEGG: hbu:Hbut_1100 conserved crenarchaeal protein.
 
  
 0.692
Cmaq_0885
TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); seryl-tRNA synthetase class IIa; KEGG: hbu:Hbut_1249 seryl-tRNA synthetase.
       0.682
Cmaq_0887
Hypothetical protein.
       0.557
Cmaq_0423
Hypothetical protein; KEGG: pis:Pisl_1404 type II secretion system protein.
  
  
 0.512
Cmaq_0425
PFAM: type II secretion system protein; KEGG: pai:PAE2779 hypothetical protein.
  
  
 0.511
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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