Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Cmaq_0893Dehydrogenase (flavoprotein)-like protein; KEGG: pis:Pisl_0732 hypothetical protein. (393 aa)    
Predicted Functional Partners:
Cmaq_0478
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pai:PAE0723 ferredoxin like protein.
  
 
 0.602
Cmaq_0892
SMART: metal-dependent phosphohydrolase HD region; KEGG: pai:PAE0632 hypothetical protein.
       0.536
dnaG
TOPRIM domain protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
 
   
 0.529
spt5
Transcription termination antitermination factor; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.
  
     0.495
Cmaq_0958
PFAM: UbiA prenyltransferase; KEGG: pai:PAE1784 hypothetical 4-hydroxybenzoate octaprenyltransferase.
 
  
 0.491
Cmaq_1981
PFAM: Protein of unknown function DUF655; KEGG: pis:Pisl_0580 putative nucleotide binding protein.
  
     0.485
priL
DNA primase, large subunit; Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair.
  
    0.474
Cmaq_0891
KEGG: sso:SSO2262 hypothetical protein.
  
  
 0.459
Cmaq_0440
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pai:PAE3586 electron transfer flavoprotein beta subunit.
  
 
 0.454
Cmaq_0477
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pis:Pisl_0646 electron transfer flavoprotein beta-subunit.
  
 
 0.453
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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