Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_0909Hypothetical protein. (368 aa)    
Predicted Functional Partners:
Cmaq_0908
Hypothetical protein.
       0.933
Cmaq_0911
PFAM: protein of unknown function DUF58; KEGG: pfu:PF0417 hypothetical protein.
       0.721
Cmaq_0912
Hypothetical protein.
       0.544
Cmaq_0910
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: pab:PAB1276 methanol dehydrogenase regulatory protein.
       0.522
rps3
Ribosomal protein S3- domain protein; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
       0.511
Cmaq_0906
PFAM: oxidoreductase domain protein; KEGG: pai:PAE0870 conserved NAD/P oxidoreductase.
       0.430
Cmaq_0913
Hypothetical protein.
       0.404
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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