Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cmaq_0953KEGG: pai:PAE1625 putative serine/threonine protein kinase. (244 aa)    
Predicted Functional Partners:
Cmaq_2000
PFAM: Protein of unknown function DUF54; KEGG: tko:TK1335 hypothetical protein; Belongs to the UPF0201 family.
 
     0.753
cca
tRNA cytidylyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.
     
 0.743
Cmaq_1117
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.702
Cmaq_1880
PFAM: protein of unknown function DUF343; KEGG: pai:PAE0284 hypothetical protein.
  
     0.674
Cmaq_1999
KEGG: mka:MK0400 dephospho-CoA kinase.
       0.664
Cmaq_0438
Dolichyl-diphosphooligosaccharide--protein glycotransferase; PFAM: Oligosaccharyl transferase STT3 subunit; KEGG: pis:Pisl_0431 oligosaccharyl transferase, STT3 subunit.
  
     0.626
Cmaq_1751
KEGG: pai:PAE1446 hypothetical protein.
  
     0.583
Cmaq_1953
PFAM: THUMP domain protein; KEGG: pai:PAE2935 hypothetical protein.
  
     0.578
spt5
Transcription termination antitermination factor; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.
 
     0.576
Cmaq_1054
KEGG: pai:PAE0705 hypothetical protein.
  
     0.576
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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