STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_0969PFAM: protein of unknown function DUF1680; KEGG: tma:TM0280 hypothetical protein. (634 aa)    
Predicted Functional Partners:
rpl10e
PFAM: Ribosomal protein L10E; KEGG: pis:Pisl_0917 ribosomal protein L10E; Belongs to the universal ribosomal protein uL16 family.
       0.550
Cmaq_0970
PFAM: beta-lactamase domain protein; KEGG: pho:PH1079 hypothetical protein.
       0.540
Cmaq_0172
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: sus:Acid_5559 alpha-L-rhamnosidase.
  
     0.507
Cmaq_0390
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: aba:Acid345_0902 alpha-L-fucosidase.
  
     0.495
Cmaq_1002
PFAM: glycoside hydrolase family 76; KEGG: sco:SCO0068 hydrolase (secreted protein).
  
     0.469
Cmaq_0602
PFAM: glycosyl hydrolase 38 domain protein; KEGG: aba:Acid345_0644 glycosyl hydrolases 38-like.
  
     0.426
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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