STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_1050PFAM: PUA domain containing protein; KEGG: pai:PAE1626 PUA domain protein. (174 aa)    
Predicted Functional Partners:
Cmaq_1049
PFAM: protein of unknown function RIO1; RIO2 kinase, winged helix-like; KEGG: hbu:Hbut_0072 RIO-like serine/threonine kinase.
 
    0.840
rps28e
PFAM: Ribosomal protein S28e; KEGG: pis:Pisl_0587 ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family.
  
 
   0.691
rps3
Ribosomal protein S3- domain protein; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
  
 
   0.673
rpl7ae
Ribosomal protein L7Ae/L30e/S12e/Gadd45; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
  
 
   0.655
Cmaq_1529
PFAM: Like-Sm ribonucleoprotein core; SMART: Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; KEGG: pis:Pisl_1081 like-Sm ribonucleoprotein, core.
 
     0.650
rps4e
PFAM: RNA-binding S4 domain protein; Ribosomal protein S4E, central; KEGG: pis:Pisl_0560 ribosomal protein S4E, central; Belongs to the eukaryotic ribosomal protein eS4 family.
    
   0.626
Cmaq_0577
PFAM: putative RNA methylase; KEGG: pai:PAE0261 methylase, conjectural.
  
   
 0.617
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
    
   0.598
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: pis:Pisl_0771 ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 
   0.595
flpA
Non-specific serine/threonine protein kinase; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family.
   
 
 0.592
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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