STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_1141PFAM: SAF domain protein; KEGG: sto:ST2559 altronate hydrolase. (99 aa)    
Predicted Functional Partners:
Cmaq_1140
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: sso:SSO1259 altronate hydrolase.
 
  
  0.994
mdh
Lactate/malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily.
    
  0.900
Cmaq_1139
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sto:ST2561 hypothetical DgoA protein.
  
  
 0.802
Cmaq_0207
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: chy:CHY_1256 hydrolase, UxaA family.
 
     0.769
Cmaq_1138
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pto:PTO0380 hypothetical membrane protein.
       0.757
Cmaq_1142
KEGG: sai:Saci_1237 hypothetical protein.
       0.528
Cmaq_1143
PFAM: major facilitator superfamily MFS_1; KEGG: sso:SSO3149 permease, putative.
       0.451
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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