STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_1144TIGRFAM: pyridoxal phosphate-dependent enzyme, putative; KEGG: tac:Ta0673 hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family. (388 aa)    
Predicted Functional Partners:
Cmaq_0885
TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); seryl-tRNA synthetase class IIa; KEGG: hbu:Hbut_1249 seryl-tRNA synthetase.
    
 0.940
Cmaq_1143
PFAM: major facilitator superfamily MFS_1; KEGG: sso:SSO3149 permease, putative.
       0.572
fni-2
Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
       0.556
Cmaq_1142
KEGG: sai:Saci_1237 hypothetical protein.
       0.486
Cmaq_1531
PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Initiation factor eIF2 gamma, C terminal; KEGG: pis:Pisl_0078 protein synthesis factor, GTP-binding.
 
  
 0.444
Cmaq_1682
PFAM: protein of unknown function DUF871; KEGG: sto:ST0866 hypothetical protein.
 
     0.433
Cmaq_1791
PFAM: UspA domain protein; KEGG: sso:SSO0529 hypothetical protein.
  
 
 0.416
Cmaq_1851
PFAM: UspA domain protein; KEGG: bsu:BG11134 similar to unknown proteins.
  
 
 0.416
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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