STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_1318Histone acetyltransferase, ELP3 family; KEGG: pis:Pisl_1167 radical SAM domain protein; TIGRFAM: histone acetyltransferase, ELP3 family; PFAM: GCN5-related N-acetyltransferase; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB. (510 aa)    
Predicted Functional Partners:
Cmaq_1765
NMD3; PFAM: NMD3; KEGG: pai:PAE1653 hypothetical protein.
   
    0.728
Cmaq_1255
PFAM: PP-loop domain protein; KEGG: pis:Pisl_1017 PP-loop domain protein.
  
 
 0.725
tuf
Translation elongation factor EF-1, subunit alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.
  
 
   0.677
Cmaq_0343
PFAM: protein of unknown function Met10; KEGG: pis:Pisl_0714 protein of unknown function Met10.
 
  
 0.660
Cmaq_1319
Hypothetical protein.
  
   0.655
rtcA
RNA-3'-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.
   
  
 0.653
Cmaq_1056
Brix; Probably involved in the biogenesis of the ribosome.
  
    0.621
Cmaq_1334
PFAM: ribosomal RNA adenine methylase transferase; KEGG: pai:PAE3221 dimethyladenosine transferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
  
 0.614
Cmaq_1306
TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Nucleolar GTP-binding 1; KEGG: pai:PAE3626 hypothetical protein.
  
    0.607
Cmaq_0268
PFAM: Protein of unknown function DUF171; KEGG: pis:Pisl_0966 protein of unknown function DUF171.
  
    0.595
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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