STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_1374PFAM: beta-lactamase domain protein; KEGG: tvo:TVN0167 Zn-dependent hydrolase. (192 aa)    
Predicted Functional Partners:
Cmaq_1373
KEGG: tpe:Tpen_1671 hypothetical protein.
       0.572
Cmaq_1375
KEGG: tpe:Tpen_0989 protein of unknown function DUF1626.
       0.509
Cmaq_0556
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pai:PAE2070 acyl-CoA dehydrogenase.
 
 
 0.406
Cmaq_0812
PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: tvo:TVN0472 predicted transporter component.
 
     0.406
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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