STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_1497PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC0577 oxidoreductase. (376 aa)    
Predicted Functional Partners:
Cmaq_1496
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: oih:OB3419 hypothetical protein.
 
  
 0.862
Cmaq_1495
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rle:RL0824 putative oxidoreductase.
 
    
0.811
Cmaq_1498
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ctc:CTC00512 myo-inositol catabolism protein iolE.
 
  
 0.683
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: sso:SSO0090 Lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.557
Cmaq_1494
PFAM: extracellular solute-binding protein family 5; KEGG: sto:ST2534 putative peptide transport system substrate-binding protein.
       0.513
Cmaq_0432
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tte:TTE1949 sugar phosphate isomerase/epimerase.
 
  
 0.493
Cmaq_0708
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: eca:ECA1953 putative xylose isomerase.
 
  
 0.452
Cmaq_0649
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rsp:RSP_3671 putative D-tagatose 3-epimerase.
 
  
 0.435
Cmaq_1662
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tpe:Tpen_1349 xylose isomerase domain protein TIM barrel.
 
  
 0.410
Cmaq_0948
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bcl:ABC3437 hypothetical protein.
 
  
 0.401
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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