Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cmaq_1557PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pis:Pisl_0313 peptidase U62, modulator of DNA gyrase. (448 aa)    
Predicted Functional Partners:
Cmaq_1973
PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pho:PH0848 hypothetical protein.
 
   
 0.924
gatE
Putative aspartyl-tRNA(Asn) amidotransferase, B subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate.
       0.596
Cmaq_0175
PFAM: protein of unknown function DUF814; KEGG: pai:PAE3259 hypothetical protein.
   
    0.538
Cmaq_0987
PFAM: Radical SAM domain protein; KEGG: pai:PAE2191 pyruvate formate-lyase activating enzyme homolog.
       0.477
Cmaq_1561
PFAM: regulatory protein ArsR; KEGG: pab:PAB2328 hypothetical protein.
 
     0.458
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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