Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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Score
Cmaq_1606PFAM: Bacterio-opsin activator HTH domain protein; KEGG: sai:Saci_2116 conserved archaeal HTH DNA binding domain protein. (229 aa)    
Predicted Functional Partners:
aroK
TIGRFAM: shikimate kinase; PFAM: GHMP kinase; KEGG: sso:SSO0308 shikimate kinase.
  
     0.550
Cmaq_0287
PFAM: Bacterio-opsin activator HTH domain protein; KEGG: sso:SSO1868 hypothetical protein.
  
     0.542
Cmaq_1138
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pto:PTO0380 hypothetical membrane protein.
  
     0.499
Cmaq_1149
SMART: helix-turn-helix domain protein; KEGG: pai:PAE1638 putative transcriptional regulator.
  
     0.494
Cmaq_1605
Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: pis:Pisl_1836 peptidase M24.
       0.469
Cmaq_1607
KEGG: tpe:Tpen_1771 hypothetical protein.
       0.460
Cmaq_0146
PFAM: transcriptional regulator TrmB; KEGG: mka:MK0800 predicted transcriptional regulator containing a wHTH DNA-binding domain.
  
     0.449
Cmaq_1604
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: sso:SSO2283 NADH oxidase.
 
     0.442
priS
Putative DNA primase, small subunit; Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer s [...]
  
     0.439
Cmaq_1188
PFAM: transcriptional regulator TrmB; KEGG: sai:Saci_1161 HTH domain protein.
  
     0.430
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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