Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cmaq_1720PFAM: Bacterio-opsin activator HTH domain protein; KEGG: sso:SSO3080 hypothetical protein. (229 aa)    
Predicted Functional Partners:
Cmaq_0287
PFAM: Bacterio-opsin activator HTH domain protein; KEGG: sso:SSO1868 hypothetical protein.
  
     0.624
Cmaq_1149
SMART: helix-turn-helix domain protein; KEGG: pai:PAE1638 putative transcriptional regulator.
  
     0.555
Cmaq_1721
Hypothetical protein.
       0.554
aroK
TIGRFAM: shikimate kinase; PFAM: GHMP kinase; KEGG: sso:SSO0308 shikimate kinase.
  
     0.553
Cmaq_0146
PFAM: transcriptional regulator TrmB; KEGG: mka:MK0800 predicted transcriptional regulator containing a wHTH DNA-binding domain.
  
     0.533
priS
Putative DNA primase, small subunit; Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer s [...]
  
     0.506
Cmaq_1188
PFAM: transcriptional regulator TrmB; KEGG: sai:Saci_1161 HTH domain protein.
  
     0.496
Cmaq_0405
TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; Protein of unknown function DUF1225; KEGG: sto:ST2552 hypothetical protein.
  
     0.474
ribK
Protein of unknown function DUF120; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family.
  
     0.474
Cmaq_1248
PFAM: transposase IS605 OrfB; Protein of unknown function DUF1225; KEGG: sso:SSO0842 transposase ISC1476.
  
     0.473
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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