STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Cmaq_1757PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sso:SSO3004 3-oxoacyl-(acyl carrier protein) reductase. (302 aa)    
Predicted Functional Partners:
ilvD
TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: sai:Saci_1715 dihydroxyacid dehydratase/phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
     
 0.661
Cmaq_1756
KEGG: pai:PAE2275 hypothetical protein.
       0.603
Cmaq_1080
PFAM: metallophosphoesterase; KEGG: pai:PAE2904 exonuclease SbcD, conjectural.
  
 
 0.587
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: pis:Pisl_0771 ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
   
   0.541
rpl10
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 
 0.465
Cmaq_1132
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: pis:Pisl_1102 serine/threonine protein kinase.
  
 0.423
Cmaq_1759
Hypothetical protein.
       0.415
Cmaq_1913
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: btk:BT9727_2708 enoyl-CoA hydratase.
  
 0.406
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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