STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_1765NMD3; PFAM: NMD3; KEGG: pai:PAE1653 hypothetical protein. (310 aa)    
Predicted Functional Partners:
Cmaq_1306
TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Nucleolar GTP-binding 1; KEGG: pai:PAE3626 hypothetical protein.
 
 
 0.973
rps8e
PFAM: Ribosomal protein S8E; KEGG: pis:Pisl_0575 ribosomal protein S8e.
  
 
 0.933
eif6
Putative translation initiation factor eIF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.
  
 
 0.907
rpl10
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 
 0.858
Cmaq_0980
PFAM: KH type 1 domain protein; KEGG: hbu:Hbut_1405 universally conserved protein.
  
  
 0.849
Cmaq_0982
PFAM: TGS domain protein; KEGG: pai:PAE1649 GTP-binding protein.
  
    0.806
rpl31e
PFAM: Ribosomal protein L31e; KEGG: pai:PAE3095 ribosomal protein L31; Belongs to the ribosomal protein L31e family.
  
 
 0.805
Cmaq_1868
PFAM: MscS Mechanosensitive ion channel; KEGG: sto:ST0844 hypothetical protein.
   
    0.805
Cmaq_1284
PFAM: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC; KEGG: pai:PAE3232 nop family pre-rRNA processing protein.
  
 
 0.799
Cmaq_0582
PFAM: Translation initiation factor IF2/IF5; KEGG: pis:Pisl_1439 translation initiation factor IF5.
  
  
 0.752
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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