STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_1791PFAM: UspA domain protein; KEGG: sso:SSO0529 hypothetical protein. (136 aa)    
Predicted Functional Partners:
gap
TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type II; PFAM: glyceraldehyde 3-phosphate dehydrogenase; dihydrodipicolinate reductase; KEGG: sso:SSO0528 NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase.
 
  
 0.951
pgk
PFAM: phosphoglycerate kinase; KEGG: sso:SSO0527 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
 
    0.950
Cmaq_1294
PFAM: CBS domain containing protein; KEGG: sai:Saci_0212 CBS domain protein.
  
    0.683
Cmaq_1068
TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pis:Pisl_1828 methylated-DNA--protein-cysteine methyltransferase.
  
  
 0.594
Cmaq_0841
TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; KEGG: pab:PAB2077 hypothetical protein.
  
     0.577
Cmaq_1792
TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; KEGG: sto:ST1197 hypothetical quinolinate synthetase A.
     
 0.553
Cmaq_1185
PFAM: major facilitator superfamily MFS_1; KEGG: sso:SSO2746 hypothetical protein.
  
     0.527
Cmaq_1793
TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sso:SSO0997 Aspartate oxidase.
     
 0.518
Cmaq_0313
PFAM: major facilitator superfamily MFS_1; KEGG: sso:SSO3010 hypothetical protein.
  
     0.507
Cmaq_1317
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pai:PAE0656 hypothetical protein.
 
    0.481
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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