STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cmaq_1840TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: pai:PAE1813 ABC transporter subunit, putative. (474 aa)    
Predicted Functional Partners:
Cmaq_1841
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pis:Pisl_1744 FeS assembly ATPase SufC.
 
 0.998
Cmaq_1839
PFAM: SufBD protein; KEGG: pfu:PF1285 hypothetical protein.
 
   
 0.943
Cmaq_1838
PFAM: aspartate/glutamate/uridylate kinase; KEGG: hbu:Hbut_0269 carbamate kinase; Belongs to the carbamate kinase family.
       0.584
Cmaq_0248
PFAM: protein of unknown function DUF59; KEGG: pai:PAE2055 hypothetical protein.
 
   
 0.444
rpl6
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
  
    0.442
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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