Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Cmaq_1909Hypothetical protein. (318 aa)    
Predicted Functional Partners:
Cmaq_1910
KEGG: sai:Saci_1858 cytochrome b558/566 subunit A.
     
 0.940
Cmaq_1912
PFAM: Cytochrome b/b6 domain; KEGG: sto:ST1667 hypothetical cytochrome b.
     
 0.634
Cmaq_1911
PFAM: Rieske [2Fe-2S] domain protein; KEGG: sto:ST1666 hypothetical Rieske iron-sulfur protein.
     
 0.596
Cmaq_1913
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: btk:BT9727_2708 enoyl-CoA hydratase.
       0.440
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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