Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cmaq_1999KEGG: mka:MK0400 dephospho-CoA kinase. (178 aa)    
Predicted Functional Partners:
Cmaq_2000
PFAM: Protein of unknown function DUF54; KEGG: tko:TK1335 hypothetical protein; Belongs to the UPF0201 family.
 
    0.950
cca
tRNA cytidylyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.
 
     0.774
Cmaq_2001
PFAM: protein of unknown function DUF6 transmembrane; KEGG: pis:Pisl_1137 protein of unknown function DUF6, transmembrane.
       0.737
Cmaq_0809
Transketolase central region; PFAM: Transketolase domain protein; Transketolase central region; KEGG: sai:Saci_0181 pyridine-binding domain transketolase.
     
 0.728
Cmaq_1309
PFAM: N2N2-dimethylguanosine tRNA methyltransferase; KEGG: pai:PAE1628 N2,N2-dimethylguonasine tRNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
       0.714
Cmaq_1117
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.698
Cmaq_1687
PFAM: helix-turn-helix domain protein; KEGG: pis:Pisl_1655 transcriptional regulator, XRE family.
 
     0.678
Cmaq_0953
KEGG: pai:PAE1625 putative serine/threonine protein kinase.
       0.664
Cmaq_1781
PFAM: Protein of unknown function DUF137; KEGG: pai:PAE3406 hypothetical protein.
 
     0.661
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
  
    0.652
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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