STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH98658.1Penicillin-binding protein 2. (970 aa)    
Predicted Functional Partners:
SDH91198.1
Cell division protein FtsQ; Essential cell division protein.
 
 
 0.956
SDI79455.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.953
SDI79246.1
Rod shape determining protein RodA; Belongs to the SEDS family.
 
 
 0.950
SDI18880.1
Cell division protein FtsW, lipid II flippase; Belongs to the SEDS family.
 
 
 0.905
SDI18844.1
Cell division protein FtsI/penicillin-binding protein 2.
  
  
0.902
SDI79500.1
Rod shape-determining protein MreB.
 
 
 0.890
SDH91342.1
Stage V sporulation protein D (sporulation-specific penicillin-binding protein).
 
  
0.883
SDI18918.1
FHA domain-containing protein.
 
 
 0.875
SDH91235.1
Cell division protein FtsW; Belongs to the SEDS family.
 
 
 0.861
SDI75109.1
Tetratricopeptide repeat-containing protein.
 
     0.744
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.