STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI01625.1Simple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. (392 aa)    
Predicted Functional Partners:
SDI01592.1
Simple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
SDI01658.1
Simple sugar transport system ATP-binding protein.
 
 0.999
SDI01692.1
Basic membrane protein A.
 
 
 0.994
SDI37363.1
L-arabinose transport system ATP-binding protein.
  
  0.744
SDI53836.1
Simple sugar transport system ATP-binding protein.
  
  0.723
SDI35037.1
Ribose transport system ATP-binding protein.
  
  0.693
SDI39200.1
Ribose transport system ATP-binding protein.
  
  0.684
SDI55531.1
Putative multiple sugar transport system ATP-binding protein.
  
  0.540
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
 
    0.528
SDH95231.1
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.412
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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