STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI01873.1MoxR-like ATPase. (310 aa)    
Predicted Functional Partners:
SDI01801.1
Transglutaminase-like superfamily protein.
 
  
 0.956
SDI01837.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
 
  
 0.905
SDI16521.1
Protein of unknown function DUF58.
 
  
 0.663
SDI01729.1
tRNA (cytidine/uridine-2'-O-)-methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.655
SDI01761.1
Hypothetical protein.
       0.650
SDI82454.1
Arginine/lysine/ornithine decarboxylase.
   
 
 0.501
SDI75184.1
Lysine decarboxylase.
   
 
 0.501
SDI38254.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
  
    0.474
SDI01912.1
Vancomycin resistance protein YoaR, contains peptidoglycan-binding and VanW domains.
       0.463
SDJ14115.1
Von Willebrand factor type A domain-containing protein.
  
 
 0.401
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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