STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI02803.1HesB-like selenoprotein. (113 aa)    
Predicted Functional Partners:
SDH87088.1
Nitrogen fixation protein NifU.
  
  
 0.808
SDI16146.1
Hypothetical protein.
    
 
 0.787
SDI02750.1
HesB-like selenoprotein.
      
0.686
SDH86724.1
Cysteine desulfurase.
  
  
 0.642
SDI94164.1
Cysteine desulfurase.
  
  
 0.642
SDH87168.1
Hypothetical protein.
  
 
 0.569
SDH87202.1
Fe-S cluster assembly protein SufB.
  
 
 0.569
SDJ08305.1
Glutaredoxin.
  
  
 0.567
SDH87244.1
Fe-S cluster assembly ATP-binding protein.
  
 
 0.555
SDI56958.1
NADPH-dependent glutamate synthase beta chain.
  
  
 0.489
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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