STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI07401.1CRP/FNR family transcriptional regulator, anaerobic regulatory protein. (233 aa)    
Predicted Functional Partners:
SDI00023.1
Signal transduction histidine kinase.
   
 0.940
SDI81951.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.904
SDI75109.1
Tetratricopeptide repeat-containing protein.
   
 
 0.876
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.816
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.810
SDI17506.1
Heavy-metal-associated domain-containing protein.
 
    0.805
SDI18350.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.762
SDH84406.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.751
SDI17543.1
Cd2+/Zn2+-exporting ATPase.
 
     0.747
SDI44420.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein/HDIG domain-containing protein.
 
 0.744
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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