STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI07481.1Hippurate hydrolase. (375 aa)    
Predicted Functional Partners:
SDI07560.1
2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase.
 
  
 0.918
SDI07699.1
Diaminopimelate epimerase.
    
 0.890
SDI07592.1
4-hydroxy-tetrahydrodipicolinate reductase.
     
 0.809
SDI07776.1
Diaminopimelate decarboxylase.
 
   
 0.796
SDI07525.1
acetylornithine/N-succinyldiaminopimelate aminotransferase.
       0.786
SDI07666.1
Aspartate-semialdehyde dehydrogenase.
  
    0.780
SDI07631.1
4-hydroxy-tetrahydrodipicolinate synthase.
       0.751
SDI07740.1
Aspartate kinase.
     
 0.747
SDI05016.1
Succinyl-diaminopimelate desuccinylase.
    
 0.452
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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