Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDI12332.1 | SDI12368.1 | SAMN05421804_101734 | SAMN05421804_101735 | Flagellar protein FliS. | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | 0.998 |
SDI12332.1 | SDI12413.1 | SAMN05421804_101734 | SAMN05421804_101736 | Flagellar protein FliS. | FlaG protein. | 0.989 |
SDI12332.1 | SDI12625.1 | SAMN05421804_101734 | SAMN05421804_101740 | Flagellar protein FliS. | Flagellar hook-associated protein 3 FlgL. | 0.998 |
SDI12332.1 | SDI12785.1 | SAMN05421804_101734 | SAMN05421804_101744 | Flagellar protein FliS. | Flagellar motor switch protein FliN/FliY. | 0.999 |
SDI12332.1 | SDI12947.1 | SAMN05421804_101734 | SAMN05421804_101748 | Flagellar protein FliS. | Chemotaxis protein CheC. | 0.794 |
SDI12332.1 | SDI57573.1 | SAMN05421804_101734 | SAMN05421804_103143 | Flagellar protein FliS. | Flagellin. | 0.997 |
SDI12332.1 | csrA | SAMN05421804_101734 | SAMN05421804_101738 | Flagellar protein FliS. | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.941 |
SDI12332.1 | flgK | SAMN05421804_101734 | SAMN05421804_101741 | Flagellar protein FliS. | Flagellar hook-associated protein 1 FlgK. | 0.998 |
SDI12332.1 | fliW | SAMN05421804_101734 | SAMN05421804_101739 | Flagellar protein FliS. | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.957 |
SDI12368.1 | SDI12332.1 | SAMN05421804_101735 | SAMN05421804_101734 | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar protein FliS. | 0.998 |
SDI12368.1 | SDI12413.1 | SAMN05421804_101735 | SAMN05421804_101736 | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | FlaG protein. | 0.992 |
SDI12368.1 | SDI12625.1 | SAMN05421804_101735 | SAMN05421804_101740 | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar hook-associated protein 3 FlgL. | 0.994 |
SDI12368.1 | SDI12785.1 | SAMN05421804_101735 | SAMN05421804_101744 | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar motor switch protein FliN/FliY. | 0.999 |
SDI12368.1 | SDI12947.1 | SAMN05421804_101735 | SAMN05421804_101748 | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Chemotaxis protein CheC. | 0.924 |
SDI12368.1 | SDI57573.1 | SAMN05421804_101735 | SAMN05421804_103143 | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellin. | 0.985 |
SDI12368.1 | csrA | SAMN05421804_101735 | SAMN05421804_101738 | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.825 |
SDI12368.1 | flgK | SAMN05421804_101735 | SAMN05421804_101741 | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar hook-associated protein 1 FlgK. | 0.997 |
SDI12368.1 | fliW | SAMN05421804_101735 | SAMN05421804_101739 | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.914 |
SDI12413.1 | SDI12332.1 | SAMN05421804_101736 | SAMN05421804_101734 | FlaG protein. | Flagellar protein FliS. | 0.989 |
SDI12413.1 | SDI12368.1 | SAMN05421804_101736 | SAMN05421804_101735 | FlaG protein. | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | 0.992 |
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