STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI14290.1Type I restriction enzyme, R subunit. (1011 aa)    
Predicted Functional Partners:
SDI14369.1
Type I restriction enzyme M protein.
 
 
 0.987
SDI14332.1
Type I restriction enzyme, S subunit.
 
  
 0.976
SDH94106.1
Type I restriction enzyme M protein.
 
 
 0.951
SDH94075.1
Type I restriction enzyme, S subunit.
 
  
 0.907
SDJ19739.1
Type I restriction enzyme M protein.
  
 
 0.795
SDI57910.1
Type I restriction enzyme M protein.
  
 
 0.794
SDI45275.1
Hypothetical protein.
  
 
 0.784
SDI14251.1
Hypothetical protein.
       0.752
SDI57944.1
Type I restriction enzyme, S subunit.
  
  
 0.613
SDJ19700.1
Type I restriction enzyme, S subunit.
  
  
 0.607
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.