STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI40672.1Virginiamycin A acetyltransferase. (212 aa)    
Predicted Functional Partners:
SDI17657.1
Rifampin ADP-ribosylating transferase.
      0.873
SDI33327.1
UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase.
  
 
 0.724
SDJ26775.1
UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase.
  
 
 0.724
SDJ26817.1
UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase.
  
 
 0.724
SDJ41092.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.702
SDJ26994.1
dTDP-4-amino-4,6-dideoxygalactose transaminase.
  
 
 0.652
SDI33363.1
UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing).
  
 
 0.623
SDJ26723.1
UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing); Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
 
 0.623
SDI40705.1
Lincosamide nucleotidyltransferase A/C/D/E.
 
     0.609
SDI02140.1
Serine O-acetyltransferase.
  
 
 0.487
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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