STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI44054.1Twitching motility protein PilT. (352 aa)    
Predicted Functional Partners:
SDI44090.1
Type IV pilus assembly protein PilC.
  
 0.969
SDI43878.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
 
   
 0.910
SDJ39605.1
Type II secretory pathway, component PulF.
 
  
 0.873
SDI43916.1
Type IV pilus assembly protein PilM.
 
   
 0.824
SDI44121.1
Type IV pilus assembly protein PilA.
 
   
 0.813
SDI44018.1
Type IV pilus assembly protein PilB.
 
  
0.795
SDI43985.1
Tfp pilus assembly protein PilO.
  
  
 0.625
SDI00023.1
Signal transduction histidine kinase.
     
 0.580
SDI43949.1
Tfp pilus assembly protein PilN.
  
  
 0.518
SDJ36559.1
Elongation factor Tu.
      
 0.453
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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