STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI44529.1Branched-chain amino acid aminotransferase. (358 aa)    
Predicted Functional Partners:
SDI81951.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.938
SDJ25897.1
Homoserine dehydrogenase.
  
 
 0.924
SDJ25813.1
Homoserine kinase.
  
 
 0.893
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
    
 0.877
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 
 0.771
SDH93435.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
 0.765
SDI72766.1
Aspartate aminotransferase.
  
 
 0.741
SDI74845.1
Aspartate aminotransferase.
  
 
 0.741
SDJ14693.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
  0.705
SDH93466.1
2-oxoglutarate ferredoxin oxidoreductase subunit beta.
    
  0.699
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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