STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI59436.1Phage shock protein PspC (stress-responsive transcriptional regulator). (67 aa)    
Predicted Functional Partners:
SDI00023.1
Signal transduction histidine kinase.
  
 
 0.938
SDI57495.1
Signal transduction histidine kinase.
  
  
 0.682
SDI91890.1
Putative adhesin.
  
  
 0.564
SDI59473.1
Hypothetical protein.
       0.503
SDI19043.1
Hypothetical protein.
  
  
 0.487
SDI63277.1
Serine protease Do.
  
  
 0.487
SDI95279.1
Serine protease Do.
  
  
 0.487
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.