STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI65366.1AraC-type DNA-binding protein. (288 aa)    
Predicted Functional Partners:
SDI81951.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.890
SDI65417.1
N-acetylglucosamine transport system substrate-binding protein.
 
   
 0.888
SDI65529.1
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase.
 
     0.884
SDI36157.1
AraC-type DNA-binding protein.
 
0.881
SDI62737.1
AraC-type DNA-binding protein.
 
0.881
glmS
Glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
    
 0.811
SDI65495.1
N-acetylglucosamine transport system permease protein.
 
   
 0.796
SDI65453.1
N-acetylglucosamine transport system permease protein.
 
   
 0.782
SDI00023.1
Signal transduction histidine kinase.
     
 0.743
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.
    
  0.739
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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