STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI88244.1Regulatory protein, luxR family. (376 aa)    
Predicted Functional Partners:
SDI00023.1
Signal transduction histidine kinase.
  
 0.998
SDH84406.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.924
SDI44420.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein/HDIG domain-containing protein.
  
 
 0.924
SDH99990.1
PAS domain S-box-containing protein.
  
 0.917
SDI17376.1
Shikimate kinase.
  
 0.917
SDI57495.1
Signal transduction histidine kinase.
  
 0.821
SDI95498.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.814
SDI88143.1
Hypothetical protein.
 
     0.807
SDI88081.1
Di-and tricarboxylate transporter.
 
    0.799
SDI12785.1
Flagellar motor switch protein FliN/FliY.
  
 
 0.778
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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