STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI88952.1Membrane associated serine protease, rhomboid family. (274 aa)    
Predicted Functional Partners:
SDI77274.1
Regulator of protease activity HflC, stomatin/prohibitin superfamily.
  
 0.971
SDI14611.1
N-acetylmuramoyl-L-alanine amidase.
 
   0.701
SDI04409.1
N-acetylmuramoyl-L-alanine amidase.
  
   0.672
SDI60458.1
N-acetylmuramoyl-L-alanine amidase.
  
   0.661
SDH86283.1
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.595
SDI53375.1
DnaD and phage-associated domain-containing protein.
  
     0.571
SDI54216.1
Protein of unknown function.
  
     0.571
SDI88992.1
Hypothetical protein.
       0.499
SDJ03058.1
Uncharacterized membrane protein YesL.
  
     0.470
SDJ22399.1
Aconitate hydratase.
  
     0.430
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.