STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI89395.1CAAX protease self-immunity. (240 aa)    
Predicted Functional Partners:
SDI32383.1
Beta-N-acetylglucosaminidase.
  
 
   0.821
SDI36626.1
Beta-N-acetylglucosaminidase.
  
   0.818
SDI89356.1
3-methyladenine DNA glycosylase AlkD.
       0.766
SDI19823.1
N-acetylmuramoyl-L-alanine amidase.
   
   0.755
SDJ05821.1
D-alanyl-D-alanine carboxypeptidase.
   
   0.755
SDI63087.1
ABC-2 type transport system permease protein.
  
  
 0.605
SDI63120.1
ABC-2 type transport system permease protein.
  
  
 0.605
msrB
Peptide-methionine (R)-S-oxide reductase.
       0.605
SDI89318.1
Hypothetical protein.
       0.595
SDJ07938.1
Putative TM nitroreductase.
 
  
 0.593
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.