STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI88081.1Di-and tricarboxylate transporter. (461 aa)    
Predicted Functional Partners:
SDI88143.1
Hypothetical protein.
 
    0.845
SDI88244.1
Regulatory protein, luxR family.
 
    0.799
SDI88175.1
Formate C-acetyltransferase.
 
     0.735
SDI88206.1
Pyruvate formate lyase activating enzyme.
 
     0.583
SDI88112.1
Alcohol dehydrogenase.
  
    0.526
SDI82672.1
acetyl-CoA carboxylase carboxyl transferase subunit alpha/acetyl-CoA carboxylase carboxyl transferase subunit beta.
     
 0.483
SDI02303.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase; Belongs to the sulfur carrier protein TusA family.
  
  
 0.435
SDI88013.1
Hypothetical protein.
       0.410
SDI88047.1
ADP-ribose pyrophosphatase YjhB, NUDIX family.
       0.410
SDI33701.1
Permease of the drug/metabolite transporter (DMT) superfamily.
  
     0.409
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.