STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ09605.1Ribosomal-protein-alanine N-acetyltransferase. (172 aa)    
Predicted Functional Partners:
SDI81951.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.893
SDI15883.1
Putative acetyltransferase.
  
    0.777
SDJ09561.1
GntR family transcriptional regulator / MocR family aminotransferase.
       0.773
SDH93435.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
  0.552
SDJ24079.1
Ribosomal-protein-alanine N-acetyltransferase.
  
     0.551
SDJ09525.1
Uncharacterized membrane protein.
       0.543
SDI07525.1
acetylornithine/N-succinyldiaminopimelate aminotransferase.
   
 
 0.532
SDH97150.1
Arginase; Belongs to the arginase family.
     
 0.521
rnc
Ribonuclease-3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.515
SDJ09645.1
Hypothetical protein.
       0.437
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.