STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ10463.1AraC-type DNA-binding protein. (355 aa)    
Predicted Functional Partners:
SDI81951.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.890
SDJ10542.1
L(+)-tartrate dehydratase alpha subunit.
 
     0.662
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.594
SDJ10506.1
Anion transporter.
 
     0.587
SDJ10582.1
L(+)-tartrate dehydratase beta subunit.
 
     0.537
SDJ10391.1
Hydrophobic/amphiphilic exporter-1, HAE1 family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
 
 0.523
SDH93665.1
Helix-turn-helix domain-containing protein.
 
  
 
0.493
SDI36157.1
AraC-type DNA-binding protein.
 
  
0.445
SDI62737.1
AraC-type DNA-binding protein.
 
  
0.442
SDJ10416.1
DNA-binding transcriptional regulator, AcrR family.
       0.436
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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