STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ06481.1Two-component system, LytT family, sensor kinase/two-component system, LytT family, sensor histidine kinase LytS. (568 aa)    
Predicted Functional Partners:
SDJ06513.1
Two-component system, LytT family, response regulator LytT.
 0.992
SDI88742.1
DNA-binding response regulator, LytR/AlgR family.
 
 0.946
SDI89108.1
Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains.
  
     0.769
SDJ06574.1
Carbon starvation protein CstA.
 
   
 0.690
SDI61015.1
LytTr DNA-binding domain-containing protein.
  
 0.599
SDJ02865.1
Two-component system, response regulator YesN.
  
  0.527
SDI14993.1
Two-component system, response regulator YesN.
  
  0.526
SDI34469.1
Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains.
 
  
  0.505
SDI10104.1
Two-component system, response regulator YesN.
  
  0.484
SDI37251.1
Two-component system, response regulator YesN.
  
  0.484
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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