STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ06885.1Phytoene synthase. (313 aa)    
Predicted Functional Partners:
SDJ06922.1
Phytoene desaturase.
 
 0.997
SDI87968.1
Deoxyadenosine/deoxycytidine kinase.
   
 0.964
SDI76574.1
NADH-quinone oxidoreductase subunit F.
  
 
 0.961
SDI82672.1
acetyl-CoA carboxylase carboxyl transferase subunit alpha/acetyl-CoA carboxylase carboxyl transferase subunit beta.
  
  
  0.887
SDI71965.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
  
 0.876
SDJ06846.1
TIGR00297 family protein.
 
   
 0.842
SDI00924.1
Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.819
SDI99467.1
Acetaldehyde dehydrogenase / alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
   
 
 0.803
SDI72656.1
4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
  
  
 0.775
SDI79765.1
Small subunit ribosomal protein S1.
  
  
 0.762
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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