STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ19373.1Putative ABC transport system ATP-binding protein. (214 aa)    
Predicted Functional Partners:
SDI30656.1
Putative ABC transport system permease protein.
  
 0.993
SDJ19336.1
Hypothetical protein.
       0.781
SDI64767.1
Lipoprotein-releasing system permease protein.
 
 0.746
SDI88611.1
Polar amino acid transport system permease protein.
 
 
 
  0.705
SDI83471.1
Putative ABC transport system permease protein.
  
  0.699
SDJ09332.1
Putative ABC transport system permease protein.
 
 
0.696
SDI58159.1
Putative ABC transport system permease protein.
 
  0.679
SDI92348.1
Putative ABC transport system permease protein.
  
  0.679
SDJ28493.1
Putative ABC transport system permease protein.
  
  0.679
SDJ06380.1
Outer membrane lipoprotein-sorting protein.
   
 
 0.664
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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