STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ24230.1Alcohol dehydrogenase. (366 aa)    
Predicted Functional Partners:
SDI42162.1
Acetaldehyde dehydrogenase (acetylating).
 
 0.972
SDI81951.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.960
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 
 0.887
SDI07877.1
Hydroxypyruvate reductase.
  
 
 0.792
SDH86039.1
NADH-quinone oxidoreductase subunit F/NADP-reducing hydrogenase subunit HndC.
  
 
 0.773
SDJ24194.1
Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family.
       0.768
SDI76574.1
NADH-quinone oxidoreductase subunit F.
  
 
 0.730
SDI56958.1
NADPH-dependent glutamate synthase beta chain.
    
 0.714
SDI99467.1
Acetaldehyde dehydrogenase / alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
 
0.707
SDH93435.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
 0.706
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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