STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ37767.1CRISPR-associated protein Csd2. (282 aa)    
Predicted Functional Partners:
SDJ37811.1
CRISPR-associated protein Csd1.
 
 
 
 0.997
SDJ37850.1
CRISPR-associated protein Cas5d.
 
 
 
 0.997
SDJ37640.1
CRISPR-associated protein Cas2.
 
   
 0.972
SDJ37890.1
CRISPR-associated endonuclease/helicase Cas3.
 
  
 0.972
SDJ37723.1
CRISPR-associated exonuclease Cas4.
 
   
 0.968
SDJ37682.1
CRISP-associated protein Cas1.
 
   
 0.967
Your Current Organism:
Proteiniclasticum ruminis
NCBI taxonomy Id: 398199
Other names: AS 1.5057, Clostridium sp. D3RC-3r, DSM 24773, JCM 14817, P. ruminis, Proteiniclasticum ruminis Zhang et al. 2010, strain D3RC-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.